IL_8BTK_191

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_191 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.2229

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8BTK|1|B5|C|1905
8BTK|1|B5|A|1906
8BTK|1|B5|G|1907
*
8BTK|1|B5|C|1958
8BTK|1|B5|U|1959
8BTK|1|B5|G|1960

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bm

Ubiquitin

Chain Bs

60S acidic ribosomal protein P0