IL_8BTK_192

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8BTK|1|B5|G|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_192 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3615

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8BTK|1|B5|G|1912
8BTK|1|B5|U|1913
8BTK|1|B5|G|1914
8BTK|1|B5|G|1915
8BTK|1|B5|C|1916
*
8BTK|1|B5|G|1928
8BTK|1|B5|A|1929
8BTK|1|B5|A|1930
8BTK|1|B5|U|1931
8BTK|1|B5|C|1932

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

60S acidic ribosomal protein P0

Chain Bt

Ribosomal protein L12