IL_8BTK_204

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

8BTK|1|B5|G|2389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_204 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3869

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

8BTK|1|B5|G|2385
8BTK|1|B5|A|2386
8BTK|1|B5|G|2387
8BTK|1|B5|U|2388
8BTK|1|B5|G|2389
8BTK|1|B5|G|2390
*
8BTK|1|B5|C|2615
8BTK|1|B5|G|2616
8BTK|1|B5|C|2617

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Bk

eL38

Chain TC

Signal sequence receptor subunit 3