IL_8BTK_229

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_229 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.2743

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8BTK|1|B5|G|3442
8BTK|1|B5|A|3443
8BTK|1|B5|A|3444
8BTK|1|B5|U|3445
8BTK|1|B5|G|3446
*
8BTK|1|B5|C|3471
8BTK|1|B5|G|3472
8BTK|1|B5|C|3473

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Aa

40S ribosomal protein S3a

Chain BA

60S ribosomal protein L8