IL_8BTK_244

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

A(OMG)AGACA*UCGUUUU

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|A|3675
8BTK|1|B5|OMG|3676
8BTK|1|B5|A|3677
8BTK|1|B5|G|3678
8BTK|1|B5|A|3679
8BTK|1|B5|C|3680
8BTK|1|B5|A|3681
*
8BTK|1|B5|U|3791
8BTK|1|B5|C|3792
8BTK|1|B5|G|3793
8BTK|1|B5|U|3794
8BTK|1|B5|U|3795
8BTK|1|B5|U|3796
8BTK|1|B5|U|3797

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain BN

Ribosomal protein L15

Chain Bi

60S ribosomal protein L36

Chain Bv

Ribosomal protein uL1