IL_8BTK_248

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCG*CU

Length

5 nucleotides

Bulged bases

8BTK|1|B5|C|3824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_248 not in the Motif Atlas

Geometric match to IL_6XKO_001

Geometric discrepancy: 0.3897

The information below is about IL_6XKO_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8BTK|1|B5|G|3823
8BTK|1|B5|C|3824
8BTK|1|B5|G|3825
*
8BTK|1|B5|C|3840
8BTK|1|B5|U|3841

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain BA

60S ribosomal protein L8

Chain BG

60S ribosomal protein L7a

Chain Bg

60S ribosomal protein L34