IL_8BTK_259

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_259 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1546

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8BTK|1|B5|C|4158
8BTK|1|B5|C|4159
8BTK|1|B5|A|4160
8BTK|1|B5|A|4161
8BTK|1|B5|G|4162
*
8BTK|1|B5|C|4172
8BTK|1|B5|G|4173
8BTK|1|B5|A|4174
8BTK|1|B5|C|4175
8BTK|1|B5|G|4176

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

Ribosomal protein L10

Chain Bm

Ubiquitin