IL_8BTK_264

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8BTK|1|B5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_264 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3884

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8BTK|1|B5|U|4214
8BTK|1|B5|U|4215
8BTK|1|B5|G|4216
*
8BTK|1|B5|C|4231
8BTK|1|B5|C|4232
8BTK|1|B5|A|4233
8BTK|1|B5|A|4234
8BTK|1|B5|G|4235

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

60S ribosomal protein L13a

Chain Bm

Ubiquitin