IL_8BTK_272

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8BTK|1|B5|C|4466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_272 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3575

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8BTK|1|B5|C|4328
8BTK|1|B5|C|4329
8BTK|1|B5|A|4330
8BTK|1|B5|U|4331
*
8BTK|1|B5|A|4463
8BTK|1|B5|G|4464
8BTK|1|B5|G|4465
8BTK|1|B5|C|4466
8BTK|1|B5|G|4467

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

60S ribosomal protein L13a