IL_8BTK_277

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

8BTK|1|B5|A|4402, 8BTK|1|B5|U|4403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_277 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2361

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8BTK|1|B5|U|4387
8BTK|1|B5|U|4388
*
8BTK|1|B5|A|4401
8BTK|1|B5|A|4402
8BTK|1|B5|U|4403
8BTK|1|B5|G|4404

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain Bd

Ribosomal protein L31