IL_8BTK_279

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAG*CUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_279 not in the Motif Atlas

Homologous match to IL_8C3A_130

Geometric discrepancy: 0.3404

The information below is about IL_8C3A_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BTK|1|B5|C|4485
8BTK|1|B5|G|4486
8BTK|1|B5|A|4487
8BTK|1|B5|A|4488
8BTK|1|B5|G|4489
*
8BTK|1|B5|C|4697
8BTK|1|B5|U|4698
8BTK|1|B5|G|4699

Current chains

Chain B5

28S rRNA

Nearby chains