IL_8BTK_282
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGAG
- Length
- 21 nucleotides
- Bulged bases
- 8BTK|1|B5|C|4504, 8BTK|1|B5|U|4505, 8BTK|1|B5|A|4511, 8BTK|1|B5|G|4609, 8BTK|1|B5|C|4610, 8BTK|1|B5|G|4612, 8BTK|1|B5|A|4615
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_282 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.5887
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8BTK|1|B5|C|4503
8BTK|1|B5|C|4504
8BTK|1|B5|U|4505
8BTK|1|B5|C|4506
8BTK|1|B5|G|4507
8BTK|1|B5|G|4508
8BTK|1|B5|A|4509
8BTK|1|B5|U|4510
8BTK|1|B5|A|4511
8BTK|1|B5|G|4512
8BTK|1|B5|C|4513
*
8BTK|1|B5|G|4607
8BTK|1|B5|U|4608
8BTK|1|B5|G|4609
8BTK|1|B5|C|4610
8BTK|1|B5|G|4611
8BTK|1|B5|G|4612
8BTK|1|B5|A|4613
8BTK|1|B5|G|4614
8BTK|1|B5|A|4615
8BTK|1|B5|G|4616
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BE
- 60S ribosomal protein L6
- Chain BH
- 60S ribosomal protein L9
- Chain BM
- Ribosomal protein L14
- Chain BO
- 60S ribosomal protein L13a
- Chain BS
- 60S ribosomal protein L18a
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