IL_8BTK_308

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_308 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.2122

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8BTK|1|A2|OMU|116
8BTK|1|A2|C|117
8BTK|1|A2|C|118
8BTK|1|A2|PSU|119
8BTK|1|A2|U|120
8BTK|1|A2|OMU|121
*
8BTK|1|A2|A|344
8BTK|1|A2|U|345
8BTK|1|A2|U|346
8BTK|1|A2|C|347
8BTK|1|A2|G|348

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ah

40S ribosomal protein S8