IL_8BTK_317

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGAAAAAA(PSU)(PSU)*ACCGCAGCUA

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|U|806
8BTK|1|A2|U|807
8BTK|1|A2|G|808
8BTK|1|A2|A|809
8BTK|1|A2|A|810
8BTK|1|A2|A|811
8BTK|1|A2|A|812
8BTK|1|A2|A|813
8BTK|1|A2|A|814
8BTK|1|A2|PSU|815
8BTK|1|A2|PSU|816
*
8BTK|1|A2|A|850
8BTK|1|A2|C|851
8BTK|1|A2|C|852
8BTK|1|A2|G|853
8BTK|1|A2|C|854
8BTK|1|A2|A|855
8BTK|1|A2|G|856
8BTK|1|A2|C|857
8BTK|1|A2|U|858
8BTK|1|A2|A|859

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ak

40S ribosomal protein S11

Chain Av

Ribosomal protein S15a