IL_8BTK_319
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8BTK|1|A2|C|1154, 8BTK|1|A2|U|1156, 8BTK|1|A2|G|1158
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_319 not in the Motif Atlas
- Homologous match to IL_8P9A_425
- Geometric discrepancy: 0.1465
- The information below is about IL_8P9A_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BTK|1|A2|C|1092
8BTK|1|A2|G|1093
8BTK|1|A2|A|1094
*
8BTK|1|A2|U|1153
8BTK|1|A2|C|1154
8BTK|1|A2|U|1155
8BTK|1|A2|U|1156
8BTK|1|A2|U|1157
8BTK|1|A2|G|1158
8BTK|1|A2|G|1159
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AA
- 40S ribosomal protein S27
- Chain Ab
- Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2
- Chain Ak
- 40S ribosomal protein S11
- Chain Am
- uS15
- Chain Av
- Ribosomal protein S15a
- Chain Aw
- 40S ribosomal protein S23
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