IL_8BTK_320
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_320 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3317
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BTK|1|A2|C|1099
8BTK|1|A2|G|1100
8BTK|1|A2|A|1101
8BTK|1|A2|U|1102
8BTK|1|A2|G|1103
8BTK|1|A2|C|1104
*
8BTK|1|A2|G|1130
8BTK|1|A2|G|1131
8BTK|1|A2|G|1132
8BTK|1|A2|C|1133
8BTK|1|A2|A|1134
8BTK|1|A2|G|1135
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AA
- 40S ribosomal protein S27
- Chain AE
- eS26
- Chain AZ
- 40S ribosomal protein SA
- Chain Aa
- 40S ribosomal protein S3a
- Chain Am
- uS15
- Chain Aq
- 40S ribosomal protein eS17
Coloring options: