IL_8BTK_327

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

8BTK|1|A2|G|1498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_327 not in the Motif Atlas

Geometric match to IL_8ZA0_002

Geometric discrepancy: 0.3401

The information below is about IL_8ZA0_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8BTK|1|A2|U|1334
8BTK|1|A2|G|1335
*
8BTK|1|A2|U|1497
8BTK|1|A2|G|1498
8BTK|1|A2|A|1499

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

uS14

Chain Ac

40S ribosomal protein S3

Chain Aj

Ribosomal protein eS10

Chain At

40S ribosomal protein uS10