IL_8BTK_329

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

(4AC)G*CA(OMG)

Length

5 nucleotides

Bulged bases

8BTK|1|A2|A|1490

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_329 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.1468

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8BTK|1|A2|4AC|1338
8BTK|1|A2|G|1339
*
8BTK|1|A2|C|1489
8BTK|1|A2|A|1490
8BTK|1|A2|OMG|1491

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

uS14

Chain Ab

Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2

Chain Ac

40S ribosomal protein S3

Chain Ap

uS9

Chain At

40S ribosomal protein uS10