IL_8BTK_384

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAG*CU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_384 not in the Motif Atlas

Homologous match to IL_8GLP_165

Geometric discrepancy: 0.3017

The information below is about IL_8GLP_165

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

8BTK|1|B5|G|4486
8BTK|1|B5|A|4487
8BTK|1|B5|A|4488
8BTK|1|B5|G|4489
*
8BTK|1|B5|C|4697
8BTK|1|B5|U|4698

Current chains

Chain B5

28S rRNA

Nearby chains