IL_8BTK_385

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8BTK|1|B5|C|4639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_385 not in the Motif Atlas

Geometric match to IL_8P9A_231

Geometric discrepancy: 0.3985

The information below is about IL_8P9A_231

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8BTK|1|B5|G|4638
8BTK|1|B5|C|4639
8BTK|1|B5|G|4640
*
8BTK|1|B5|C|4659
8BTK|1|B5|C|4660

Current chains

Chain B5

28S rRNA

Nearby chains