IL_8BUU_035

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGGC*GUUACC

Length

11 nucleotides

Bulged bases

8BUU|1|A|A|943

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_035 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.51

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8BUU|1|A|G|926
8BUU|1|A|G|927
8BUU|1|A|G|928
8BUU|1|A|G|929
8BUU|1|A|C|930
*
8BUU|1|A|G|940
8BUU|1|A|U|941
8BUU|1|A|U|942
8BUU|1|A|A|943
8BUU|1|A|C|944
8BUU|1|A|C|945

Current chains

Chain A

23S rRNA

Nearby chains