IL_8BUU_073
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCGAAG*CGAAGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 8BUU|1|A|G|1830, 8BUU|1|A|A|1845, 8BUU|1|A|U|1849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BUU_073 not in the Motif Atlas
- Homologous match to IL_7RQB_070
- Geometric discrepancy: 0.0621
- The information below is about IL_7RQB_070
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.3
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BUU|1|A|U|1827
8BUU|1|A|G|1828
8BUU|1|A|C|1829
8BUU|1|A|G|1830
8BUU|1|A|A|1831
8BUU|1|A|A|1832
8BUU|1|A|G|1833
*
8BUU|1|A|C|1842
8BUU|1|A|G|1843
8BUU|1|A|A|1844
8BUU|1|A|A|1845
8BUU|1|A|G|1846
8BUU|1|A|U|1847
8BUU|1|A|A|1848
8BUU|1|A|U|1849
8BUU|1|A|A|1850
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: