IL_8BYV_020

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BYV_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1481

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8BYV|1|a|U|417
8BYV|1|a|G|418
8BYV|1|a|A|419
8BYV|1|a|U|420
8BYV|1|a|G|421
8BYV|1|a|A|422
8BYV|1|a|A|423
8BYV|1|a|G|424
*
8BYV|1|a|C|435
8BYV|1|a|G|436
8BYV|1|a|U|437
8BYV|1|a|A|438
8BYV|1|a|A|439
8BYV|1|a|A|440
8BYV|1|a|A|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4