IL_8BYV_036

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BYV_036 not in the Motif Atlas

Geometric match to IL_4LFB_033

Geometric discrepancy: 0.0768

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8BYV|1|a|C|787
8BYV|1|a|A|788
8BYV|1|a|A|789
8BYV|1|a|A|790
8BYV|1|a|C|791
*
8BYV|1|a|G|807
8BYV|1|a|G|808
8BYV|1|a|U|809
8BYV|1|a|A|810
8BYV|1|a|G|811

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11