IL_8BYV_048

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8BYV|1|a|C|1066

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BYV_048 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.2203

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8BYV|1|a|U|1064
8BYV|1|a|G|1065
8BYV|1|a|C|1066
8BYV|1|a|A|1067
8BYV|1|a|U|1068
*
8BYV|1|a|A|1215
8BYV|1|a|U|1216
8BYV|1|a|G|1217

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z