IL_8BYV_059

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BYV_059 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2135

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BYV|1|a|C|1314
8BYV|1|a|G|1315
8BYV|1|a|G|1316
8BYV|1|a|A|1317
8BYV|1|a|U|1318
8BYV|1|a|U|1319
*
8BYV|1|a|A|1340
8BYV|1|a|U|1341
8BYV|1|a|G|1342
8BYV|1|a|A|1343
8BYV|1|a|A|1344
8BYV|1|a|G|1345

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13