IL_8BYV_067

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UGGA*UAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BYV_067 not in the Motif Atlas

Geometric match to IL_8VTW_011

Geometric discrepancy: 0.1706

The information below is about IL_8VTW_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8BYV|1|a|U|1451
8BYV|1|a|G|1452
8BYV|1|a|G|1453
8BYV|1|a|A|1454
*
8BYV|1|a|U|1471
8BYV|1|a|A|1472
8BYV|1|a|G|1473

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20