IL_8C01_019

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8C01|1|2|U|320, 8C01|1|2|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C01_019 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2849

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8C01|1|2|U|318
8C01|1|2|U|319
8C01|1|2|U|320
8C01|1|2|C|321
8C01|1|2|G|322
8C01|1|2|A|323
*
8C01|1|2|U|345
8C01|1|2|G|346

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A