IL_8C01_046

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8C01|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C01_046 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.1705

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8C01|1|2|U|893
8C01|1|2|U|894
8C01|1|2|G|895
8C01|1|2|U|896
8C01|1|2|C|897
8C01|1|2|A|898
8C01|1|2|G|899
*
8C01|1|2|C|910
8C01|1|2|U|911
8C01|1|2|U|912
8C01|1|2|G|913
8C01|1|2|G|914
8C01|1|2|A|915
8C01|1|2|U|916
8C01|1|2|U|917
8C01|1|2|U|918
8C01|1|2|A|919

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-A