IL_8C01_056

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUAAUUUGGAAACUCAC*GGCCG

Length

23 nucleotides

Bulged bases

8C01|1|2|G|1201, 8C01|1|2|A|1203

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C01|1|2|C|1180
8C01|1|2|U|1181
8C01|1|2|U|1182
8C01|1|2|A|1183
8C01|1|2|A|1184
8C01|1|2|U|1185
8C01|1|2|U|1186
8C01|1|2|U|1187
8C01|1|2|G|1188
8C01|1|2|G|1201
8C01|1|2|A|1202
8C01|1|2|A|1203
8C01|1|2|A|1204
8C01|1|2|C|1205
8C01|1|2|U|1206
8C01|1|2|C|1207
8C01|1|2|A|1208
8C01|1|2|C|1209
*
8C01|1|2|G|1454
8C01|1|2|G|1455
8C01|1|2|C|1456
8C01|1|2|C|1457
8C01|1|2|G|1458

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A

Chain r

Serine/threonine-protein kinase RIO2

Chain t

Ribosome biogenesis protein TSR1