IL_8C01_057

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C01_057 not in the Motif Atlas

Homologous match to IL_4V88_446

Geometric discrepancy: 0.2226

The information below is about IL_4V88_446

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8C01|1|2|G|1213
8C01|1|2|U|1214
8C01|1|2|C|1215
*
8C01|1|2|G|1448
8C01|1|2|U|1449
8C01|1|2|U|1450

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain e

Essential nuclear protein 1

Chain t

Ribosome biogenesis protein TSR1