IL_8C83_021

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C83_021 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.4416

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

8C83|1|2|U|318
8C83|1|2|U|319
8C83|1|2|U|320
8C83|1|2|C|321
8C83|1|2|G|322
8C83|1|2|A|323
*
8C83|1|2|U|345
8C83|1|2|G|346

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain V

40S ribosomal protein S8-B

Chain X

40S ribosomal protein S11-A