IL_8C83_031

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

8C83|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C83_031 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.2955

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8C83|1|2|G|514
8C83|1|2|A|515
8C83|1|2|G|516
*
8C83|1|2|C|536
8C83|1|2|G|537
8C83|1|2|A|538
8C83|1|2|G|539
8C83|1|2|G|540
8C83|1|2|A|541
8C83|1|2|A|542
8C83|1|2|C|543

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain g

40S ribosomal protein S30-A