IL_8C8X_019

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8C8X|1|A|G|776, 8C8X|1|A|A|788, 8C8X|1|A|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_019 not in the Motif Atlas

Homologous match to IL_7RQB_023

Geometric discrepancy: 0.1858

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

8C8X|1|A|G|775
8C8X|1|A|G|776
8C8X|1|A|G|777
*
8C8X|1|A|C|787
8C8X|1|A|A|788
8C8X|1|A|A|789
8C8X|1|A|U|790
8C8X|1|A|C|791

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain S

50S ribosomal protein L22