IL_8C8X_028

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_028 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.3337

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8C8X|1|A|G|875
8C8X|1|A|C|876
8C8X|1|A|A|877
8C8X|1|A|A|878
8C8X|1|A|G|879
*
8C8X|1|A|C|898
8C8X|1|A|A|899
8C8X|1|A|A|900
8C8X|1|A|C|901
8C8X|1|A|C|902

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16