3D structure

PDB id
8C8X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.93 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
8C8X|1|A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8C8X_035 not in the Motif Atlas
Homologous match to IL_5J7L_281
Geometric discrepancy: 0.4561
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8C8X|1|A|G|1024
8C8X|1|A|G|1025
8C8X|1|A|G|1026
8C8X|1|A|A|1027
8C8X|1|A|A|1028
8C8X|1|A|A|1029
8C8X|1|A|C|1030
*
8C8X|1|A|G|1124
8C8X|1|A|G|1125
8C8X|1|A|A|1126
8C8X|1|A|A|1127
8C8X|1|A|G|1128
8C8X|1|A|A|1129
8C8X|1|A|U|1130
8C8X|1|A|G|1131
8C8X|1|A|U|1132
8C8X|1|A|A|1133
8C8X|1|A|A|1134
8C8X|1|A|C|1135
8C8X|1|A|G|1136
8C8X|1|A|G|1137
8C8X|1|A|G|1138
8C8X|1|A|G|1139
8C8X|1|A|C|1140

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain M
50S ribosomal protein L16

Coloring options:


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