3D structure

PDB id
8C8X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.93 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
8C8X|1|A|C|1838
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8C8X_067 not in the Motif Atlas
Homologous match to IL_4WF9_070
Geometric discrepancy: 0.2576
The information below is about IL_4WF9_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8C8X|1|A|C|1837
8C8X|1|A|C|1838
8C8X|1|A|G|1839
8C8X|1|A|G|1840
*
8C8X|1|A|C|1902
8C8X|1|A|G|1903

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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