IL_8C8X_083

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_083 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.5228

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8C8X|1|A|C|2129
8C8X|1|A|U|2130
8C8X|1|A|U|2131
8C8X|1|A|U|2132
8C8X|1|A|G|2133
8C8X|1|A|A|2134
8C8X|1|A|A|2135
8C8X|1|A|G|2136
*
8C8X|1|A|U|2155
8C8X|1|A|G|2156
8C8X|1|A|G|2157
8C8X|1|A|A|2158
8C8X|1|A|G|2159

Current chains

Chain A

23S rRNA

Nearby chains