IL_8C8X_090

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UGAUACCGC*GCGGUGUUUG

Length

19 nucleotides

Bulged bases

8C8X|1|A|G|2458, 8C8X|1|A|A|2459, 8C8X|1|A|U|2493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8X|1|A|U|2457
8C8X|1|A|G|2458
8C8X|1|A|A|2459
8C8X|1|A|U|2460
8C8X|1|A|A|2461
8C8X|1|A|C|2462
8C8X|1|A|C|2463
8C8X|1|A|G|2464
8C8X|1|A|C|2465
*
8C8X|1|A|G|2485
8C8X|1|A|C|2486
8C8X|1|A|G|2487
8C8X|1|A|G|2488
8C8X|1|A|U|2489
8C8X|1|A|G|2490
8C8X|1|A|U|2491
8C8X|1|A|U|2492
8C8X|1|A|U|2493
8C8X|1|A|G|2494

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16