IL_8C8X_112

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

8C8X|1|A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_112 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.2542

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8C8X|1|A|G|1666
8C8X|1|A|G|1667
8C8X|1|A|A|1668
8C8X|1|A|A|1669
8C8X|1|A|C|1670
8C8X|1|A|U|1671
8C8X|1|A|A|1672
8C8X|1|A|G|1673
8C8X|1|A|G|1674
*
8C8X|1|A|C|1990
8C8X|1|A|U|1991
8C8X|1|A|G|1992
8C8X|1|A|U|1993
8C8X|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14