IL_8C8Y_033

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8C8Y|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_033 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1585

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

8C8Y|1|A|U|1018
8C8Y|1|A|U|1019
8C8Y|1|A|A|1020
8C8Y|1|A|A|1021
8C8Y|1|A|G|1022
8C8Y|1|A|U|1023
8C8Y|1|A|G|1024
*
8C8Y|1|A|C|1140
8C8Y|1|A|U|1141
8C8Y|1|A|A|1142
8C8Y|1|A|A|1143
8C8Y|1|A|A|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13