IL_8C8Y_040

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_040 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1021

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8C8Y|1|A|A|1262
8C8Y|1|A|U|1263
8C8Y|1|A|A|1264
8C8Y|1|A|A|1265
8C8Y|1|A|G|1266
8C8Y|1|A|U|1267
8C8Y|1|A|A|1268
8C8Y|1|A|A|1269
*
8C8Y|1|A|U|2011
8C8Y|1|A|G|2012
8C8Y|1|A|A|2013
8C8Y|1|A|A|2014
8C8Y|1|A|A|2015
8C8Y|1|A|U|2016
8C8Y|1|A|U|2017

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain S

50S ribosomal protein L22