3D structure

PDB id
8C8Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.03 Å

Loop

Sequence
CUAAG*CGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8C8Y_043 not in the Motif Atlas
Homologous match to IL_7A0S_048
Geometric discrepancy: 0.1243
The information below is about IL_7A0S_048
Detailed Annotation
UAA/GAN
Broad Annotation
UAA/GAN
Motif group
IL_89021.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8C8Y|1|A|C|1351
8C8Y|1|A|U|1352
8C8Y|1|A|A|1353
8C8Y|1|A|A|1354
8C8Y|1|A|G|1355
*
8C8Y|1|A|C|1376
8C8Y|1|A|G|1377
8C8Y|1|A|A|1378
8C8Y|1|A|U|1379
8C8Y|1|A|G|1380

Current chains

Chain A
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain C
50S ribosomal protein L2

Coloring options:


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