IL_8C8Y_058

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

8C8Y|1|A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_058 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.1727

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8C8Y|1|A|A|1669
8C8Y|1|A|C|1670
8C8Y|1|A|U|1671
8C8Y|1|A|A|1672
8C8Y|1|A|G|1673
8C8Y|1|A|G|1674
*
8C8Y|1|A|C|1990
8C8Y|1|A|U|1991
8C8Y|1|A|G|1992
8C8Y|1|A|U|1993

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14