IL_8C8Y_071

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UGA*UUUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_071 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3894

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8C8Y|1|A|U|2099
8C8Y|1|A|G|2100
8C8Y|1|A|A|2101
*
8C8Y|1|A|U|2187
8C8Y|1|A|U|2188
8C8Y|1|A|U|2189
8C8Y|1|A|G|2190

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9