3D structure

PDB id
8C8Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.03 Å

Loop

Sequence
AAUUC*GUUAU
Length
10 nucleotides
Bulged bases
8C8Y|1|A|U|846, 8C8Y|1|A|U|931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8C8Y_098 not in the Motif Atlas
Homologous match to IL_5J7L_399
Geometric discrepancy: 0.2845
The information below is about IL_5J7L_399
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_96236.1
Basepair signature
cWW-tWW-cWW-L-cWW
Number of instances in this motif group
1

Unit IDs

8C8Y|1|A|A|844
8C8Y|1|A|A|845
8C8Y|1|A|U|846
8C8Y|1|A|U|847
8C8Y|1|A|C|848
*
8C8Y|1|A|G|930
8C8Y|1|A|U|931
8C8Y|1|A|U|932
8C8Y|1|A|A|933
8C8Y|1|A|U|934

Current chains

Chain A
23S rRNA

Nearby chains

Chain Z
50S ribosomal protein L30

Coloring options:


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