3D structure

PDB id
8C8Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.03 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8C8Y_099 not in the Motif Atlas
Homologous match to IL_4WF9_117
Geometric discrepancy: 0.1315
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

8C8Y|1|A|G|1666
8C8Y|1|A|G|1667
8C8Y|1|A|A|1668
8C8Y|1|A|A|1669
8C8Y|1|A|C|1670
8C8Y|1|A|U|1671
8C8Y|1|A|A|1672
8C8Y|1|A|G|1673
8C8Y|1|A|G|1674
*
8C8Y|1|A|C|1990
8C8Y|1|A|U|1991
8C8Y|1|A|G|1992
8C8Y|1|A|U|1993
8C8Y|1|A|C|1994

Current chains

Chain A
23S rRNA

Nearby chains

Chain K
50S ribosomal protein L14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0869 s
Application loaded.