IL_8C8Y_100

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8C8Y|1|A|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_100 not in the Motif Atlas

Homologous match to IL_9DFE_082

Geometric discrepancy: 0.2841

The information below is about IL_9DFE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8C8Y|1|A|U|2081
8C8Y|1|A|A|2082
8C8Y|1|A|G|2083
*
8C8Y|1|A|U|2236
8C8Y|1|A|G|2237
8C8Y|1|A|G|2238
8C8Y|1|A|G|2239

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28