IL_8C8Y_105

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CACGAAGGUUGGCUAAU*AGGUUAGUG

Length

26 nucleotides

Bulged bases

8C8Y|1|A|G|2286, 8C8Y|1|A|U|2321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8Y|1|A|C|2283
8C8Y|1|A|A|2284
8C8Y|1|A|C|2285
8C8Y|1|A|G|2286
8C8Y|1|A|A|2287
8C8Y|1|A|A|2288
8C8Y|1|A|G|2289
8C8Y|1|A|G|2290
8C8Y|1|A|U|2291
8C8Y|1|A|U|2292
8C8Y|1|A|G|2293
8C8Y|1|A|G|2294
8C8Y|1|A|C|2295
8C8Y|1|A|U|2296
8C8Y|1|A|A|2297
8C8Y|1|A|A|2298
8C8Y|1|A|U|2299
*
8C8Y|1|A|A|2317
8C8Y|1|A|G|2318
8C8Y|1|A|G|2319
8C8Y|1|A|U|2320
8C8Y|1|A|U|2321
8C8Y|1|A|A|2322
8C8Y|1|A|G|2323
8C8Y|1|A|U|2324
8C8Y|1|A|G|2325

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27