IL_8C8Z_001

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Z_001 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.141

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8C8Z|1|A|G|24
8C8Z|1|A|U|25
8C8Z|1|A|G|26
8C8Z|1|A|G|27
8C8Z|1|A|A|28
8C8Z|1|A|U|29
8C8Z|1|A|G|30
*
8C8Z|1|A|C|510
8C8Z|1|A|U|511
8C8Z|1|A|G|512
8C8Z|1|A|A|513
8C8Z|1|A|A|514
8C8Z|1|A|A|515
8C8Z|1|A|C|516

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22